This page provides a list of placeholders for project settings that can be used in report templates for Monolix projects.
| Keyword | Description | Possible values |
| %SAEM_nbBurningIterations% | Number of iterations in the burn-in phase. | a number |
| %SAEM_nbExploratoryIterations% | If “exploratoryAutoStop” is set to FALSE, it is the number of iterations in the exploratory phase. Else, if “exploratoryAutoStop” is set to TRUE, it is the maximum of iterations in the exploratory phase. | a number |
| %SAEM_exploratoryAutoStop% | Whether exploratory autostop was used. | used / not used |
| %SAEM_exploratoryInterval% | Minimum number of interation in the exploratory phase. | a number |
| %SAEM_nbSmoothingIterations% | If “smoothingAutoStop” is set to FALSE, it is the number of iterations in the smoothing phase. Else, if “smoothingAutoStop” is set to TRUE, it is the maximum of iterations in the smoothing phase. | a number |
| %SAEM_smoothingAutoStop% | Whether smoothing autostop was used. | used / not used |
| %SAEM_smoothingInterval% | Minimum number of interation in the smoothing phase. Used only if “smoothingAutoStop” is TRUE. | a number |
| %SAEM_simulatedAnnealing% | Whether simulated annealing was used. | used / not used |
| %SAEM_decreasingRateResError% | Simulated annealing decreasing rate for the variance of the residual errors. | a number |
| %SAEM_decreasingRateIndivParam% | Simulated annealing decreasing rate for the variance of the individual parameters. | a number |
| %SAEM_withoutVariabilityMethod% | Method for parameters without variability. | variability at first stage / decreasing variability / no variability |
| %CondDist_nbMaxIterations% | Maximum number of iterations for conditional distribution sampling. | a number |
| %CondDist_nbSimulatedParameters% | Number of samples from the conditional distribution per individual. | a number |
| %CondDist_intervalLength% | Interval length for MCMC convergence assessment. | a number |
| %CondDist_relIntervalWidth% | Relative interval width for MCMC convergence assessment. | a number |
| %EBEs_nbMaxIterations% | Maximum number of optimization iterations for EBEs task. | a number |
| %EBEs_optimizationTolerance% | Optimization tolerance for EBEs task. | a number |
| %SE_nbMaxIterations% | Maximum number of optimization iterations for Standard Errors task. | a number |
| %SE_nbMinIterations% | Minimum number of optimization iterations for Standard Errors task. | a number |
| %LL_nbFixedIterations% | Monte Carlo size for the LL task. | a number |
| %LL_degreesFreedom% | Degrees of freedom of the t-distribution. | 5 (fixed) or 1, 2, 5, 10 (optimized) |
| %Global_seed% | Seed used in the project. | a number |
| %MCMC_transitionKernels% | Number of calls for each one of the three MCMC kernels. | number-number-number (e.g., 2-2-2) |
| %MCMC_acceptanceRatio% | Target acceptance ratio for MCMC. | a number |
| %MCMC_nbChains% | Computed number of chains if not automatically set. | a number |
| %MCMC_minIndivForChains% | Minimum number of individuals for chains if automatically set. | a number |
| %TotalNbSubjects% | Total number of subjects in the data set (all observation ids together). | a number |
| %TotalNbSubjectsOcc% | Total number of subjects-occasions in the dataset (all observation ids together). | a number |
| %AvgNbDosesPerSubject% | Average number of doses per subject (any administration id, any occasion, all observation ids). | a number |
| %TotalNbObservations% | Total number of observations in the data set. | if one obs id, number, if several obs id, PK: xx, PD: xx |
| %AvgNbObservationsPerID% | Average number of observations per id (all occasions together). | if one obs id, number, if several obs id, PK: xx, PD: xx |
| %MinNbObservationsPerID% | Minimum number of observations per id (all occasions together). | if one obs id, number, if several obs id, PK: xx, PD: xx |
| %MaxNbObservationsPerID% | Maximum number of observations per id (all occasions together). | if one obs id, number, if several obs id, PK: xx, PD: xx |
| %PercentCensoredObservations% | Percentage of censored observations. | if one obs id, number, if several obs id, PK: xx, PD: xx |
| %StructModelCode% | Mlxtran code for the structural model. | whole structural model file content, as shown in the Structural model tab |
| %reportGenerationDateTime(yyyy-MM-dd HH:mm:ss)% | Report generation date and time. Part of yyyy-MM-dd HH:mm:ss can be removed or reordered. | yyyy-MM-dd HH:mm:ss |
| %system% | Operating system on which report was generated. | Linux, macOS, Windows |
| %version% | Version of Monolix with which report was generated. | 2023R1 |
| %project_fileName% | File name of the project (without path). | Example: NCA_run.pkx |
| %project_filePath% | File path of the project. | Example: C:/Users/user/lixoft/monolix/monolix2024R1/demos/1.creating_and_using_models/1.1.libraries_of_models/theophylline_project.mlxtran |
| %data_fileName% | File name of the data set (without path). | Example: data.csv |
